• Album Version (5:45)
• Album Edit (4:54) You Are Not Alone [7" Singles]; You Are Not Alone [Japanese CD Maxi-Single]; You Are Not Alone (The Remixes) [US CD Maxi-Single]; You Are Not Alone [US Promo CD Maxi-Single]; The Essential Michael Jackson [US, European & International Edition] (2005); King Of Pop [Compilations] (2008)
• Radio Edit (4:34) You Are Not Alone [European, UK CD Maxi-Singles]; You Are Not Alone (The Remixes) [US CD Maxi-Single]; You Are Not Alone [European CD Single]; You Are Not Alone [UK Promo CD Single XPCD 698]; You Are Not Alone [US Promo CD Maxi-Single]; Number Ones [US, Europe & International Edition] (2003); You Are Not Alone [Visionary Single] (2006)
• Extended Version / Long Version (6:00) The Ultimate Collection (2004)
• Video Edit (5:34)
• R. Kelly Remix (6:24) You Are Not Alone [European 12" Single]; You Are Not Alone [European CD Maxi-Single]; You Are Not Alone (R&B Remixes) [UK Promo CD Maxi-Single XPCD 705]; You Are Not Alone / Rock With You (The Classic Remix Series - Part 1) [UK CD Maxi-Single]
• Video Edit (5:34)
• R. Kelly Remix (6:24) You Are Not Alone [European 12" Single]; You Are Not Alone [European CD Maxi-Single]; You Are Not Alone (R&B Remixes) [UK Promo CD Maxi-Single XPCD 705]; You Are Not Alone / Rock With You (The Classic Remix Series - Part 1) [UK CD Maxi-Single]
• R. Kelly Remix - With Live Concert Outro (6:24) You Are Not Alone [Australian CD Maxi-Single 662285 2]; You Are Not Alone [US Promo CD Maxi-Single ESK 7298]; You Are Not Alone (The Remixes - Part 2) [Brazilian CD Maxi-Single #2 Epic - 44 028 / 2-662383]
• R. Kelly Remix Edit (4:28) You Are Not Alone (The Remixes - Part 2) [Brazilian CD Maxi-Single #2 Epic - 44 028 / 2-662383]; You Are Not Alone [US Promo CD Maxi-Single]
• Franctified Club Mix (10:08) You Are Not Alone [US & European 12" Singles]; You Are Not Alone [UK & European CD Maxi-Singles]; You Are Not Alone (The Remixes) [US CD Maxi-Single]
• Classic Song Version / Classic Club Mix (7:37) You Are Not Alone [UK & European CD Maxi-Singles]; Twelves [UK Promo 7x12"] (2003); You Are Not Alone [Visionary Single] (2006); Blood On The Dance Floor album [CD & Cassette editions]
• Classic Club Edit (4:58) You Are Not Alone [Australian CD Maxi-Single Epic 662516 2]; You Are Not Alone (The Remixes - Part 2) [Brazilian CD Maxi-Single #2 Epic - 44 028 / 2-662383]; You Are Not Alone [US Promo CD Maxi-Single]; Blood On The Dance Floor album [Vinyl edition]
• Jon B. Main Mix (6:54) You Are Not Alone [European 12" Singles]; You Are Not Alone [UK & European CD Maxi-Singles]
• Jon B. Remix Edit (5:08) You Are Not Alone (The Remixes - Part 2) [Brazilian CD Maxi-Single #2 Epic - 44 028 / 2-662383]; You Are Not Alone [US Promo CD Maxi-Single]
• Jon B. Padappella Mix / Jon B. Padappella (6:53) You Are Not Alone [UK & European CD Maxi-Singles]; You Are Not Alone (R&B Remixes) [UK Promo CD Maxi-Single XPCD 705]
